ClinVar Miner

Submissions for variant NM_003977.4(AIP):c.911G>A (p.Arg304Gln) (rs104894190)

Minimum review status: Collection method:
Minimum conflict level:
ClinVar version:
Total submissions: 11
Download table as spreadsheet
Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Clinical Services Laboratory,Illumina RCV000508590 SCV000373587 likely benign Somatotroph adenoma 2017-07-27 criteria provided, single submitter clinical testing This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). Publications were found based on this search. The evidence from the literature, in combination with allele frequency data from public databases where available, was sufficient to determine this variant is unlikely to cause disease. Therefore, this variant is classified as likely benign.
GeneDx RCV000766368 SCV000512006 uncertain significance not provided 2016-07-21 criteria provided, single submitter clinical testing The R304Q variant in the AIP gene has been reported in the literature in several patients with familial isolated pituitary adenoma, sporadic pituitary adenoma, acromegaly, and/or hyperparathyroidism (Georgitsi et al., 2007; Igreja et al., 2010; Occhi et al., 2010; Tichomirowa et al., 2011; Cazabat et al., 2012; Cuny et al., 2013; Pardi et al., 2013; Preda et al., 2014; Schofl et al., 2014). This variant is located in the aryl hydrocarbon receptor (AHR) binding region and has been hypothesized to impact AIP and AHR interactions (Georgitisi et al., 2007). However, AIP also interacts with PDE4A5 and in vitro AIP-PDE4A5 functional assays suggest that the R304Q variant only has a minimal effect on AIP-PDE4A5 binding (Igreja et al., 2010). Although the R304Q variant was not observed at any significant frequency in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, this variant has been observed in 3/44 (6.8%) of unaffected centenarian patients of Ashkenazi Jewish ancestry (Freudenberg-Hua et al., 2014). The R304Q variant is a semi-conservative amino acid substitution, which may impact secondary protein structure as these residues differ in some properties. This substitution occurs at a position where amino acids with similar properties to Arginine are tolerated across species. In silico analysis is inconsistent in its predictions as to whether or not the R304Q variant is damaging to the protein structure/function. Therefore, we interpret R304Q as a variant of uncertain significance.
Laboratory for Molecular Medicine, Partners HealthCare Personalized Medicine RCV000439236 SCV000538256 uncertain significance not specified 2018-09-25 criteria provided, single submitter clinical testing The p.Arg304Gln variant in AIP has been reported in >10 individuals with pituita ry adenoma and segregated with disease in two affected members across two famili es (Georgitsi 2007, Igreja 2010, Occhi 2010, Tichomirowa 2011, Cazabat 2012, Cun y 2013, Pardi 2013, Preda 2014, Schofl 2014, Arajuo 2017). This variant has also been identified in multiple individuals without pituitary lesions (Tichomirowa 2011, Freudenberg-Hua 2014, Pardi 2013) and in 2.07% (208/10074) of Ashkenazi Je wish chromosomes, including 2 homozygous individuals, by gnomAD (http://gnomad.b However, this frequency does not rule out a pathogenic role due to the prevalence of pituitary adenoma in the general population (~11% on au topsy; Molitch 2008) and the reduced penetrance of pituitary adenoma in individu als carrying pathogenic AIP variants (15-30%; Korbonits 2018). In vitro function al studies suggest that the p.Arg304Gln variant does not have a strong impact on protein function (Georgitisi 2007, Igreja 2010, Morgan 2012); however these typ es of assays may not accurately represent biological function. Computational pre diction tools and conservation analysis do not provide strong support for or aga inst an impact to the protein. Finally, this variant is present in ClinVar with conflicting interpretations of pathogenicity (Variation ID# 4893). In summary, t he clinical significance of the p.Arg304Gln variant is uncertain. ACMG/AMP Crit eria applied: PS4_Moderate, BS3_Supporting.
Ambry Genetics RCV000571906 SCV000664979 likely benign Hereditary cancer-predisposing syndrome 2020-02-20 criteria provided, single submitter clinical testing In silico models in agreement (benign);Insufficient evidence;Other strong data supporting benign classification
Invitae RCV000766368 SCV001050682 benign not provided 2020-12-06 criteria provided, single submitter clinical testing
Mendelics RCV000508590 SCV001138359 uncertain significance Somatotroph adenoma 2019-05-28 criteria provided, single submitter clinical testing
Institute of Human Genetics, University of Leipzig Medical Center RCV000766368 SCV001441059 uncertain significance not provided 2019-01-01 criteria provided, single submitter clinical testing
OMIM RCV000508590 SCV000025348 pathogenic Somatotroph adenoma 2007-03-06 no assertion criteria provided literature only
GeneReviews RCV000005171 SCV000055843 pathologic Pituitary dependent hypercortisolism 2012-06-21 no assertion criteria provided curation Converted during submission to Pathogenic.
Aziz Sancar Institute of Experimental Medicine,Istanbul University RCV000508590 SCV000693856 pathogenic Somatotroph adenoma 2018-03-09 no assertion criteria provided research a variant already in ClinVar database associated with clinical findings in a Turkish patient
Aziz Sancar Institute of Experimental Medicine,Istanbul University RCV000735427 SCV000693857 drug response Dopamine agonists response 2018-03-09 no assertion criteria provided research a variant already in ClinVar database associated with drug response in a Turkish patient

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.