ClinVar Miner

Submissions for variant NM_003978.5(PSTPIP1):c.212+5G>A

gnomAD frequency: 0.00001  dbSNP: rs1280331114
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000546680 SCV000642082 uncertain significance Pyogenic arthritis-pyoderma gangrenosum-acne syndrome 2017-07-07 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Nucleotide substitutions within the consensus splice site are relatively common causes of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site, but this prediction has not been confirmed by published transcriptional studies. This variant has not been reported in the literature in individuals with PSTPIP1-related disease. This variant is not present in population databases (ExAC no frequency). This sequence change falls in intron 3 of the PSTPIP1 gene. It does not directly change the encoded amino acid sequence of the PSTPIP1 protein, but it affects a nucleotide within the consensus splice site of the intron.

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