ClinVar Miner

Submissions for variant NM_003982.4(SLC7A7):c.456C>T (p.Phe152=)

gnomAD frequency: 0.03113  dbSNP: rs8016634
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Total submissions: 6
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV000336852 SCV000385485 benign Lysinuric protein intolerance 2018-01-12 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
GeneDx RCV000421977 SCV000514691 benign not specified 2015-10-28 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Invitae RCV000336852 SCV000632019 benign Lysinuric protein intolerance 2024-01-31 criteria provided, single submitter clinical testing
Genome-Nilou Lab RCV000336852 SCV002045751 benign Lysinuric protein intolerance 2021-11-07 criteria provided, single submitter clinical testing
Genome Diagnostics Laboratory, The Hospital for Sick Children RCV002262980 SCV002542952 benign Autoinflammatory syndrome 2022-03-05 criteria provided, single submitter clinical testing
Natera, Inc. RCV000336852 SCV001459972 benign Lysinuric protein intolerance 2020-09-16 no assertion criteria provided clinical testing

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