ClinVar Miner

Submissions for variant NM_004006.3(DMD):c.2804-2A>C

dbSNP: rs794727357
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Athena Diagnostics RCV000201191 SCV000255716 pathogenic Duchenne muscular dystrophy 2013-10-21 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV000201191 SCV001215811 pathogenic Duchenne muscular dystrophy 2021-01-14 criteria provided, single submitter clinical testing This sequence change affects an acceptor splice site in intron 21 of the DMD gene. It is expected to disrupt RNA splicing and likely results in an absent or disrupted protein product. This variant is not present in population databases (ExAC no frequency). This variant has been observed to be hemizygous in individuals affected with Duchenne or Becker muscular dystrophy (PMID: 15351422, 27593222). ClinVar contains an entry for this variant (Variation ID: 217190). Donor and acceptor splice site variants typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in DMD are known to be pathogenic (PMID: 16770791, 25007885). For these reasons, this variant has been classified as Pathogenic.
Revvity Omics, Revvity RCV001781594 SCV002021690 pathogenic not provided 2021-02-23 criteria provided, single submitter clinical testing
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV002222440 SCV002500152 pathogenic Qualitative or quantitative defects of dystrophin 2022-03-01 criteria provided, single submitter clinical testing Variant summary: DMD c.2804-2A>C is located in a canonical splice-site and is predicted to affect mRNA splicing resulting in a significantly altered protein due to either exon skipping, shortening, or inclusion of intronic material. Several computational tools predict a significant impact on normal splicing: Three predict the variant abolishes a 3 acceptor site. At least one publication reports experimental evidence that this variant affects mRNA splicing (Deburgrave_2007). The variant was absent in 182614 control chromosomes (gnomAD). c.2804-2A>C has been reported in the literature in individuals affected with Duchenne Muscular Dystrophy (Tuffery-Giraud_2004, Deburgrave_2007, Cho_2017). These data indicate that the variant may be associated with disease. Two ClinVar submitters (evaluation after 2014) cite the variant as pathogenic. Based on the evidence outlined above, the variant was classified as pathogenic.

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