ClinVar Miner

Submissions for variant NM_004064.5(CDKN1B):c.397C>T (p.Pro133Ser)

dbSNP: rs137985549
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001062169 SCV001226949 uncertain significance Multiple endocrine neoplasia type 4 2023-12-17 criteria provided, single submitter clinical testing This sequence change replaces proline, which is neutral and non-polar, with serine, which is neutral and polar, at codon 133 of the CDKN1B protein (p.Pro133Ser). This variant is present in population databases (rs137985549, gnomAD 0.002%). This variant has not been reported in the literature in individuals affected with CDKN1B-related conditions. ClinVar contains an entry for this variant (Variation ID: 856661). An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant is likely to be tolerated. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002355069 SCV002620792 uncertain significance Hereditary cancer-predisposing syndrome 2022-11-17 criteria provided, single submitter clinical testing The p.P133S variant (also known as c.397C>T), located in coding exon 1 of the CDKN1B gene, results from a C to T substitution at nucleotide position 397. The proline at codon 133 is replaced by serine, an amino acid with similar properties. This amino acid position is poorly conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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