ClinVar Miner

Submissions for variant NM_004104.5(FASN):c.382G>A (p.Val128Met)

gnomAD frequency: 0.00025  dbSNP: rs146811868
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000531287 SCV000634973 uncertain significance Epileptic encephalopathy 2023-12-02 criteria provided, single submitter clinical testing This sequence change replaces valine, which is neutral and non-polar, with methionine, which is neutral and non-polar, at codon 128 of the FASN protein (p.Val128Met). This variant is present in population databases (rs146811868, gnomAD 0.09%), and has an allele count higher than expected for a pathogenic variant. This variant has not been reported in the literature in individuals affected with FASN-related conditions. ClinVar contains an entry for this variant (Variation ID: 462046). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Not Available"; PolyPhen-2: "Benign"; Align-GVGD: "Not Available". The methionine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002527759 SCV003711602 uncertain significance Inborn genetic diseases 2021-10-20 criteria provided, single submitter clinical testing The c.382G>A (p.V128M) alteration is located in exon 4 (coding exon 3) of the FASN gene. This alteration results from a G to A substitution at nucleotide position 382, causing the valine (V) at amino acid position 128 to be replaced by a methionine (M). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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