ClinVar Miner

Submissions for variant NM_004281.3(BAG3):c.1138C>T (p.Pro380Ser) (rs144692954)

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Total submissions: 9
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Laboratory for Molecular Medicine, Partners HealthCare Personalized Medicine RCV000150183 SCV000197101 benign not specified 2012-03-19 criteria provided, single submitter clinical testing p.Pro380Ser in Exon 04 of BAG3: This variant is not expected to have clinical si gnificance because it has been identified in 1.0% (39/3738) of African American chromosomes from a broad population by the NHLBI Exome Sequencing Project (http: //evs.gs.washington.edu/EVS; dbSNP rs144692954).
Invitae RCV000437120 SCV000288294 benign not provided 2019-02-04 criteria provided, single submitter clinical testing
PreventionGenetics,PreventionGenetics RCV000150183 SCV000310047 benign not specified criteria provided, single submitter clinical testing
EGL Genetic Diagnostics,Eurofins Clinical Diagnostics RCV000150183 SCV000344615 benign not specified 2016-08-18 criteria provided, single submitter clinical testing
Center for Pediatric Genomic Medicine,Children's Mercy Hospital and Clinics RCV000437120 SCV000511484 likely benign not provided 2016-07-22 criteria provided, single submitter clinical testing Converted during submission to Likely benign.
Integrated Genetics/Laboratory Corporation of America RCV000437120 SCV000698274 benign not provided 2017-08-04 criteria provided, single submitter clinical testing Variant summary: The BAG3 c.1138C>T (p.Pro380Ser) variant involves the alteration of a non-conserved nucleotide. 2/3 in silico tools predict a benign outcome for this variant (SNPsandGO not captured due to low reliability index). This variant was found in 180/121378 control chromosomes (2 homozygotes) from ExAC, predominantly observed in the African subpopulation at a frequency of 0.010959 (114/10402). This frequency is about 281 times the estimated maximal expected allele frequency of a pathogenic BAG3 variant (0.0000391), suggesting this is likely a benign polymorphism found primarily in the populations of African origin. In addition, multiple clinical diagnostic laboratories in ClinVar have classified this variant as benign. The variant of interest has not, to our knowledge, been reported in affected individuals in literature. Taken together, this variant is classified as benign.
Ambry Genetics RCV000621769 SCV000735219 benign Cardiovascular phenotype 2015-10-20 criteria provided, single submitter clinical testing Lines of evidence used in support of classification: Subpopulation frequency in support of benign classification,In silico models in agreement (benign)
Center for Advanced Laboratory Medicine, UC San Diego Health,University of California San Diego RCV000852642 SCV000995347 benign Atrial fibrillation 2019-04-17 criteria provided, single submitter clinical testing
Mendelics RCV000988455 SCV001138177 benign Myofibrillar myopathy, BAG3-related 2019-05-28 criteria provided, single submitter clinical testing

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