ClinVar Miner

Submissions for variant NM_004304.5(ALK):c.1705G>A (p.Val569Met)

dbSNP: rs754971913
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000524799 SCV000648629 uncertain significance Neuroblastoma, susceptibility to, 3 2020-02-12 criteria provided, single submitter clinical testing In summary, this variant is a rare missense change that is not predicted to affect protein function. There is no indication that it causes disease, but the available evidence is currently insufficient to prove that conclusively. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function output the following: (SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0"). The methionine amino acid residue is found in multiple mammalian species, suggesting that this missense change does not adversely affect protein function. These predictions have not been confirmed by published functional studies. This variant is present in population databases (rs754971913, ExAC 0.006%) but has not been reported in the literature in individuals with an ALK-related disease. This sequence change replaces valine with methionine at codon 569 of the ALK protein (p.Val569Met). The valine residue is highly conserved and there is a small physicochemical difference between valine and methionine.

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