Total submissions: 2
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Ambry Genetics | RCV001010237 | SCV001170402 | uncertain significance | Hereditary cancer-predisposing syndrome | 2019-10-25 | criteria provided, single submitter | clinical testing | The p.D40H variant (also known as c.118G>C), located in coding exon 2 of the BMPR1A gene, results from a G to C substitution at nucleotide position 118. The aspartic acid at codon 40 is replaced by histidine, an amino acid with similar properties. This amino acid position is not well conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear. |
Invitae | RCV001363982 | SCV001560114 | uncertain significance | Juvenile polyposis syndrome | 2020-05-06 | criteria provided, single submitter | clinical testing | In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated, but these predictions have not been confirmed by published functional studies and their clinical significance is uncertain. This variant has not been reported in the literature in individuals with BMPR1A-related conditions. ClinVar contains an entry for this variant (Variation ID: 818547). This variant is not present in population databases (ExAC no frequency). This sequence change replaces aspartic acid with histidine at codon 40 of the BMPR1A protein (p.Asp40His). The aspartic acid residue is moderately conserved and there is a moderate physicochemical difference between aspartic acid and histidine. |