ClinVar Miner

Submissions for variant NM_004360.5(CDH1):c.2091G>A (p.Lys697=)

gnomAD frequency: 0.00001  dbSNP: rs61747635
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Total submissions: 8
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000212380 SCV000210882 benign not specified 2014-08-04 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Ambry Genetics RCV000160373 SCV000214470 likely benign Hereditary cancer-predisposing syndrome 2014-12-11 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Labcorp Genetics (formerly Invitae), Labcorp RCV001078916 SCV000637772 likely benign Hereditary diffuse gastric adenocarcinoma 2023-10-04 criteria provided, single submitter clinical testing
Color Diagnostics, LLC DBA Color Health RCV000160373 SCV000684396 likely benign Hereditary cancer-predisposing syndrome 2017-06-15 criteria provided, single submitter clinical testing
CeGaT Center for Human Genetics Tuebingen RCV000555817 SCV001150956 likely benign not provided 2019-02-01 criteria provided, single submitter clinical testing
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV000212380 SCV001362041 likely benign not specified 2020-01-31 criteria provided, single submitter clinical testing
European Reference Network on Genetic Tumour Risk Syndromes (ERN-GENTURIS), i3s - Instituto de Investigação e Inovação em Saúde, University of Porto RCV001078916 SCV003926889 uncertain significance Hereditary diffuse gastric adenocarcinoma 2022-08-01 criteria provided, single submitter clinical testing PS4_Supporting (PMID: 30311375)
PreventionGenetics, part of Exact Sciences RCV003907492 SCV004718995 likely benign CDH1-related disorder 2019-07-30 no assertion criteria provided clinical testing This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications).

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