ClinVar Miner

Submissions for variant NM_004360.5(CDH1):c.2130T>G (p.Ile710Met)

dbSNP: rs1961236313
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001204076 SCV001375265 uncertain significance Hereditary diffuse gastric adenocarcinoma 2021-05-20 criteria provided, single submitter clinical testing This variant has not been reported in the literature in individuals with CDH1-related conditions. This variant is not present in population databases (ExAC no frequency). This sequence change replaces isoleucine with methionine at codon 710 of the CDH1 protein (p.Ile710Met). The isoleucine residue is highly conserved and there is a small physicochemical difference between isoleucine and methionine. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002418677 SCV002726141 uncertain significance Hereditary cancer-predisposing syndrome 2021-11-22 criteria provided, single submitter clinical testing The p.I710M variant (also known as c.2130T>G), located in coding exon 13 of the CDH1 gene, results from a T to G substitution at nucleotide position 2130. The isoleucine at codon 710 is replaced by methionine, an amino acid with highly similar properties. This amino acid position is well conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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