ClinVar Miner

Submissions for variant NM_004364.5(CEBPA):c.64C>T (p.Pro22Ser)

gnomAD frequency: 0.00015  dbSNP: rs770636941
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001055466 SCV001219859 uncertain significance Acute myeloid leukemia 2023-08-25 criteria provided, single submitter clinical testing This variant has not been reported in the literature in individuals affected with CEBPA-related conditions. This variant is present in population databases (rs770636941, gnomAD 0.5%), including at least one homozygous and/or hemizygous individual. This sequence change replaces proline, which is neutral and non-polar, with serine, which is neutral and polar, at codon 22 of the CEBPA protein (p.Pro22Ser). ClinVar contains an entry for this variant (Variation ID: 851134). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt CEBPA protein function.
Ambry Genetics RCV004977943 SCV005558711 likely benign Inborn genetic diseases 2024-08-21 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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