ClinVar Miner

Submissions for variant NM_004370.6(COL12A1):c.5603A>G (p.Glu1868Gly)

gnomAD frequency: 0.00001  dbSNP: rs1370422060
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001237973 SCV001410766 uncertain significance Ullrich congenital muscular dystrophy 2; Bethlem myopathy 2 2022-10-24 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on COL12A1 protein function. ClinVar contains an entry for this variant (Variation ID: 963874). This variant has not been reported in the literature in individuals affected with COL12A1-related conditions. This variant is present in population databases (no rsID available, gnomAD 0.0009%). This sequence change replaces glutamic acid, which is acidic and polar, with glycine, which is neutral and non-polar, at codon 1868 of the COL12A1 protein (p.Glu1868Gly).
GeneDx RCV001587267 SCV001825258 uncertain significance not provided 2022-05-24 criteria provided, single submitter clinical testing Has not been previously published as pathogenic or benign to our knowledge; Not observed at a significant frequency in large population cohorts (gnomAD); In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect
Mayo Clinic Laboratories, Mayo Clinic RCV001587267 SCV004223885 uncertain significance not provided 2023-03-21 criteria provided, single submitter clinical testing BP4, PM2_supporting

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