ClinVar Miner

Submissions for variant NM_004456.5(EZH2):c.2187dup (p.Asp730Ter)

dbSNP: rs797045568
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Genetic Services Laboratory, University of Chicago RCV000192778 SCV000247332 pathogenic Weaver syndrome 2014-03-27 criteria provided, single submitter clinical testing
GeneDx RCV001778781 SCV002015454 likely pathogenic not provided 2023-02-12 criteria provided, single submitter clinical testing Nonsense variant in the C-terminus predicted to result in protein truncation, as the last 22 amino acids are lost, and other loss-of-function variants have been reported downstream in the Human Gene Mutation Database (HGMD); Not observed at significant frequency in large population cohorts (gnomAD); Has not been previously published as pathogenic or benign to our knowledge
Genesis Genoma Lab, Genesis Genoma Lab RCV000192778 SCV001885898 likely pathogenic Weaver syndrome 2021-09-17 no assertion criteria provided clinical testing The nucleotide variation EZH2: c.2187dup (p.Asp730Ter) results in the formation of a premature stop codon at the 730th aminoacid of the respective protein. It has been detected in a 4 year old patient with all the clinical characteristics of Weaver syndrome and was confirmed to be de novo. Most mutations in EZH2 gene are missesnse, however pathogenic nonsense and frameshift mutations have been reported at the 3' end of the gene, after the SET domain (PMID: 31724824, 28475857). The EZH2: c.2187dup (p.Asp730Ter) variant has been reported in a patient with Weaver syndrome in a poster presentation at the European Human Genetics Conference 2016 (Simsek et al. 2016). The detected nucleutide variant is not included in gnomAD database. The nucleotide variant EZH2: c.2187dup (p.Asp730Ter) is characterized as Likely Pathogenic according to ACMG guidelines.

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