ClinVar Miner

Submissions for variant NM_004482.4(GALNT3):c.1524+3G>A

gnomAD frequency: 0.00001  dbSNP: rs1204200153
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001242369 SCV001415451 uncertain significance not provided 2023-05-16 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Variants that disrupt the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant is not likely to affect RNA splicing. ClinVar contains an entry for this variant (Variation ID: 967454). This variant has not been reported in the literature in individuals affected with GALNT3-related conditions. This variant is present in population databases (no rsID available, gnomAD 0.007%). This sequence change falls in intron 8 of the GALNT3 gene. It does not directly change the encoded amino acid sequence of the GALNT3 protein. It affects a nucleotide within the consensus splice site.
Fulgent Genetics, Fulgent Genetics RCV005029825 SCV005652098 uncertain significance Tumoral calcinosis, hyperphosphatemic, familial, 1 2024-02-19 criteria provided, single submitter clinical testing

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