ClinVar Miner

Submissions for variant NM_004614.5(TK2):c.-38A>G

gnomAD frequency: 0.25659  dbSNP: rs3743716
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000125522 SCV000168974 benign not specified 2011-07-07 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Illumina Laboratory Services, Illumina RCV000338994 SCV000398430 benign Mitochondrial DNA depletion syndrome, myopathic form 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
Genome-Nilou Lab RCV001838552 SCV002098478 benign Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3 2021-09-10 criteria provided, single submitter clinical testing
Genome-Nilou Lab RCV000338994 SCV002098479 benign Mitochondrial DNA depletion syndrome, myopathic form 2021-09-10 criteria provided, single submitter clinical testing
Breakthrough Genomics, Breakthrough Genomics RCV004709321 SCV005250297 benign not provided criteria provided, single submitter not provided

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