Submissions for variant NM_004628.5(XPC):c.1754A>G (p.Tyr585Cys)

Total submissions: 2

Submitter	RCV	SCV	Clinical significance	Condition	Last evaluated	Review status	Method	Comment
Women's Health and Genetics/Laboratory Corporation of America, LabCorp	RCV003332070	SCV004039076	likely pathogenic	Xeroderma pigmentosum	2023-08-11	criteria provided, single submitter	clinical testing	Variant summary: XPC c.1754A>G (p.Tyr585Cys) results in a non-conservative amino acid change located in the Rad4/PNGase transglutaminase-like fold (IPR018325) of the encoded protein sequence. Five of five in-silico tools predict a damaging effect of the variant on protein function. The variant allele was found at a frequency of 4e-06 in 249312 control chromosomes. c.1754A>G has been reported in the literature in two homozygous brothers with late onset malignant melanomas (Fassihi_2016) and in a childhood onset anaplastic astrocytoma patient (Muskens_2020). These data indicate that the variant is likely to be associated with disease. At least one publication reports experimental evidence indicating Unscheduled DNA Synthesis levels in skin fibroblasts of homozygous patient at 40% of normal levels (Fassihi_2016). The following publications have been ascertained in the context of this evaluation (PMID: 26884178, 31970404). No submitters have cited clinical-significance assessments for this variant to ClinVar after 2014. Based on the evidence outlined above, the variant was classified as likely pathogenic.
Baylor Genetics	RCV003459839	SCV004206982	likely pathogenic	Xeroderma pigmentosum, group C	2023-08-13	criteria provided, single submitter	clinical testing