ClinVar Miner

Submissions for variant NM_004646.4(NPHS1):c.3545C>T (p.Thr1182Met)

gnomAD frequency: 0.00008  dbSNP: rs143003940
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV001124536 SCV001283509 uncertain significance Congenital nephrotic syndrome 2018-01-13 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
Invitae RCV002070029 SCV002409690 likely benign not provided 2024-01-31 criteria provided, single submitter clinical testing
Ambry Genetics RCV003246708 SCV003940437 uncertain significance Inborn genetic diseases 2023-05-03 criteria provided, single submitter clinical testing The c.3545C>T (p.T1182M) alteration is located in exon 28 (coding exon 28) of the NPHS1 gene. This alteration results from a C to T substitution at nucleotide position 3545, causing the threonine (T) at amino acid position 1182 to be replaced by a methionine (M). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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