Submissions for variant NM_005055.5(RAPSN):c.1166+2T>G

Total submissions: 1

Submitter	RCV	SCV	Clinical significance	Condition	Last evaluated	Review status	Method	Comment
Labcorp Genetics (formerly Invitae), Labcorp	RCV003091624	SCV003476929	pathogenic	Fetal akinesia deformation sequence 1; Congenital myasthenic syndrome 11	2022-10-28	criteria provided, single submitter	clinical testing	For these reasons, this variant has been classified as Pathogenic. This variant disrupts a region of the RAPSN protein in which other variant(s) (p.Thr396Profs*12) have been determined to be pathogenic (PMID: 26782015, 29054425). This suggests that this is a clinically significant region of the protein, and that variants that disrupt it are likely to be disease-causing. Variants that disrupt the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. Disruption of this splice site has been observed in individual(s) with RAPSN-related conditions (PMID: 30266093). This variant is not present in population databases (gnomAD no frequency). This sequence change affects a donor splice site in intron 7 of the RAPSN gene. While this variant is not anticipated to result in nonsense mediated decay, it likely alters RNA splicing and results in a disrupted protein product.