ClinVar Miner

Submissions for variant NM_005249.5(FOXG1):c.958del (p.Arg320fs)

dbSNP: rs1555321382
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000599579 SCV000710178 pathogenic not provided 2019-12-12 criteria provided, single submitter clinical testing Frameshift variant predicted to result in protein truncation in a gene for which loss-of-function is a known mechanism of disease; Not observed in large population cohorts (Lek et al., 2016); Has not been previously published as pathogenic or benign to our knowledge; This variant is associated with the following publications: (PMID: 32901917)
3billion RCV001775136 SCV002012342 pathogenic Rett syndrome, congenital variant 2021-10-02 criteria provided, single submitter clinical testing Frameshift: predicted to result in a loss or disruption of normal protein function through nonsense-mediated decay (NMD) or protein truncation. Multiple pathogenic variants are reported downstream of the variant (PVS1_VS). It is not observed in the gnomAD v2.1.1 dataset (PM2). The variant was observed as assumed (i.e. paternity and maternity not confirmed) de novoo (3billion dataset, PM6). The variant has been reported as pathogenic (ClinVar ID: VCV000503880.3).Therefore, this variant is classified as pathogenic according to the recommendation of ACMG/AMP guideline.

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