Total submissions: 1
| Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
|---|---|---|---|---|---|---|---|---|
| New York Genome Center | RCV001839110 | SCV002099023 | uncertain significance | Hyperinsulinism-hyperammonemia syndrome | 2021-04-09 | criteria provided, single submitter | clinical testing | The de novo c.240C>G (p.Ile80Met) variant identified in the GLUD1 gene substitutes a conserved Isoleucine for Methionine at amino acid 80/559 (exon 1/13). The c.240C>G (p.Ile80Met) variant is absent from gnomAD(v3.1) suggesting it is not a common benign variant in the populations represented in that database. In silico algorithms predict this variant to be Damaging (SIFT; score: 0.022) and Benign (REVEL; score:0.5059) to the function of the canonical transcript. This variant is absent from ClinVar and to our current knowledge has not been reported in affected individuals in the literature. The p.Ile80 residue is not within a mapped domain of GLUD1 (UniProtKB:P00367), and most pathogenic variants in GLUD1 are found in the GTP allosteric binding domain (exon 11/12) or catalytic domain (exon 6/7) [For Review; [PMID:19254908]). While it is identified de novo in an affected individual, its presence outside of domains in which pathogenic variants have been reported result in the classification of the c.240C>G (p.Ile80Met) variant identified in the GLUD1 gene as a Variant of Uncertain Significance. |