ClinVar Miner

Submissions for variant NM_005373.3(MPL):c.578G>A (p.Cys193Tyr)

gnomAD frequency: 0.00001  dbSNP: rs1313333589
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Mendelics RCV002247983 SCV002518252 uncertain significance not specified 2022-05-04 criteria provided, single submitter clinical testing
Invitae RCV003101330 SCV003263784 uncertain significance Congenital amegakaryocytic thrombocytopenia; Essential thrombocythemia 2022-09-21 criteria provided, single submitter clinical testing This sequence change replaces cysteine, which is neutral and slightly polar, with tyrosine, which is neutral and polar, at codon 193 of the MPL protein (p.Cys193Tyr). This variant is present in population databases (no rsID available, gnomAD 0.0009%). This missense change has been observed in individual(s) with congenital amegakaryocytic thrombocytopenia (PMID: 17034029). In at least one individual the data is consistent with being in trans (on the opposite chromosome) from a pathogenic variant. ClinVar contains an entry for this variant (Variation ID: 1684891). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on MPL protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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