ClinVar Miner

Submissions for variant NM_005477.3(HCN4):c.1748A>G (p.Asn583Ser)

gnomAD frequency: 0.00001  dbSNP: rs1204195890
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001061395 SCV001226137 uncertain significance Brugada syndrome 8 2022-03-02 criteria provided, single submitter clinical testing This sequence change replaces asparagine, which is neutral and polar, with serine, which is neutral and polar, at codon 583 of the HCN4 protein (p.Asn583Ser). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with HCN4-related conditions. ClinVar contains an entry for this variant (Variation ID: 856019). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt HCN4 protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002402435 SCV002712205 uncertain significance Cardiovascular phenotype 2022-04-06 criteria provided, single submitter clinical testing The p.N583S variant (also known as c.1748A>G), located in coding exon 6 of the HCN4 gene, results from an A to G substitution at nucleotide position 1748. The asparagine at codon 583 is replaced by serine, an amino acid with highly similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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