ClinVar Miner

Submissions for variant NM_005477.3(HCN4):c.3212C>T (p.Thr1071Ile)

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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV002445435 SCV002611892 uncertain significance Cardiovascular phenotype 2022-04-19 criteria provided, single submitter clinical testing The p.T1071I variant (also known as c.3212C>T), located in coding exon 8 of the HCN4 gene, results from a C to T substitution at nucleotide position 3212. The threonine at codon 1071 is replaced by isoleucine, an amino acid with similar properties. This amino acid position is conserved. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.
Labcorp Genetics (formerly Invitae), Labcorp RCV003099300 SCV003010551 uncertain significance Brugada syndrome 8 2023-02-09 criteria provided, single submitter clinical testing This sequence change replaces threonine, which is neutral and polar, with isoleucine, which is neutral and non-polar, at codon 1071 of the HCN4 protein (p.Thr1071Ile). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with HCN4-related conditions. ClinVar contains an entry for this variant (Variation ID: 1728957). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt HCN4 protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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