ClinVar Miner

Submissions for variant NM_005477.3(HCN4):c.3232C>T (p.Arg1078Cys)

gnomAD frequency: 0.00002  dbSNP: rs781376523
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000791636 SCV000930894 uncertain significance Brugada syndrome 8 2022-08-15 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with cysteine, which is neutral and slightly polar, at codon 1078 of the HCN4 protein (p.Arg1078Cys). The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This variant has not been reported in the literature in individuals affected with HCN4-related conditions. ClinVar contains an entry for this variant (Variation ID: 638953). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt HCN4 protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
GeneDx RCV002298773 SCV002588075 uncertain significance not provided 2022-10-26 criteria provided, single submitter clinical testing Has not been previously published as pathogenic or benign to our knowledge; Not observed at a significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant does not alter protein structure/function
Laboratorio de Genetica e Diagnostico Molecular, Hospital Israelita Albert Einstein RCV000791636 SCV003807413 uncertain significance Brugada syndrome 8 2022-11-30 criteria provided, single submitter clinical testing ACMG classification criteria: PM2 supporting

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