ClinVar Miner

Submissions for variant NM_005477.3(HCN4):c.3503T>C (p.Phe1168Ser)

gnomAD frequency: 0.00001  dbSNP: rs1374291021
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001036308 SCV001199663 uncertain significance Brugada syndrome 8 2024-12-08 criteria provided, single submitter clinical testing This sequence change replaces phenylalanine, which is neutral and non-polar, with serine, which is neutral and polar, at codon 1168 of the HCN4 protein (p.Phe1168Ser). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with HCN4-related conditions. ClinVar contains an entry for this variant (Variation ID: 835426). Invitae Evidence Modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) indicates that this missense variant is not expected to disrupt HCN4 protein function with a negative predictive value of 95%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV004030977 SCV004881103 uncertain significance Cardiovascular phenotype 2025-02-15 criteria provided, single submitter clinical testing The p.F1168S variant (also known as c.3503T>C), located in coding exon 8 of the HCN4 gene, results from a T to C substitution at nucleotide position 3503. The phenylalanine at codon 1168 is replaced by serine, an amino acid with highly dissimilar properties. This amino acid position is conserved. In addition, the in silico prediction for this alteration is inconclusive. Based on the available evidence, the clinical significance of this variant remains unclear.

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