ClinVar Miner

Submissions for variant NM_005518.4(HMGCS2):c.559+5G>A

dbSNP: rs2101272766
Minimum review status: Collection method:
Minimum conflict level:
ClinVar version:
Total submissions: 1
Download table as spreadsheet
Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Neuberg Centre For Genomic Medicine, NCGM RCV001823704 SCV002073340 uncertain significance 3-hydroxy-3-methylglutaryl-CoA synthase deficiency criteria provided, single submitter clinical testing The splice region variant c.559+5G>A in HMGCS2 (NM_005518.4) has not been reported previously as a pathogenic variant nor as a benign variant, to our knowledge. The c.559+5G>A variant is novel (not in any individuals) in gnomAD Exomes and is novel (not in any individuals) in 1000 Genomes. In silico splicing predictions are contradictory. The nucleotide c.559+5G>A in HMGCS2 is predicted conserved by GERP++ and PhyloP across 100 vertebrates. For these reasons, this variant has been classified as Uncertain Significance.

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.