ClinVar Miner

Submissions for variant NM_005609.4(PYGM):c.2177+7G>A

gnomAD frequency: 0.00022  dbSNP: rs201366697
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Total submissions: 6
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV000388531 SCV000373014 uncertain significance Glycogen storage disease, type V 2018-01-12 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease.
GeneDx RCV000604465 SCV000716023 likely benign not specified 2018-02-26 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Labcorp Genetics (formerly Invitae), Labcorp RCV000388531 SCV001047533 likely benign Glycogen storage disease, type V 2024-01-31 criteria provided, single submitter clinical testing
Revvity Omics, Revvity RCV000388531 SCV003810396 uncertain significance Glycogen storage disease, type V 2022-08-31 criteria provided, single submitter clinical testing
CeGaT Center for Human Genetics Tuebingen RCV003221900 SCV003916725 uncertain significance not provided 2023-03-01 criteria provided, single submitter clinical testing PYGM: PM2:Supporting, BP4
Natera, Inc. RCV000388531 SCV001452647 likely benign Glycogen storage disease, type V 2020-04-14 no assertion criteria provided clinical testing

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