ClinVar Miner

Submissions for variant NM_005908.4(MANBA):c.347T>C (p.Ile116Thr)

gnomAD frequency: 0.00004  dbSNP: rs775841860
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001304050 SCV001493317 uncertain significance Beta-D-mannosidosis 2022-01-06 criteria provided, single submitter clinical testing This sequence change replaces isoleucine, which is neutral and non-polar, with threonine, which is neutral and polar, at codon 116 of the MANBA protein (p.Ile116Thr). This variant is present in population databases (rs775841860, gnomAD 0.01%). This variant has not been reported in the literature in individuals affected with MANBA-related conditions. ClinVar contains an entry for this variant (Variation ID: 1006930). Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be disruptive. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV003346443 SCV004068171 uncertain significance Inborn genetic diseases 2023-06-23 criteria provided, single submitter clinical testing The c.347T>C (p.I116T) alteration is located in exon 3 (coding exon 3) of the MANBA gene. This alteration results from a T to C substitution at nucleotide position 347, causing the isoleucine (I) at amino acid position 116 to be replaced by a threonine (T). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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