ClinVar Miner

Submissions for variant NM_006005.3(WFS1):c.1079G>A (p.Cys360Tyr)

gnomAD frequency: 0.00029  dbSNP: rs147157374
Minimum review status: Collection method:
Minimum conflict level:
ClinVar version:
Total submissions: 6
Download table as spreadsheet
Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV001851006 SCV000619661 uncertain significance not provided 2024-01-22 criteria provided, single submitter clinical testing Reported as a variant of uncertain significance in a patient referred for whole exome sequencing who was also compound heterozygous for another variant of uncertain significance in WFS1 (PMID: 27959697); patient clinical information not provided; In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 26435059, 31264968, 27959697)
Genomic Research Center, Shahid Beheshti University of Medical Sciences RCV000714795 SCV000845528 uncertain significance Autosomal dominant nonsyndromic hearing loss 6 2018-08-07 criteria provided, single submitter clinical testing
Fulgent Genetics, Fulgent Genetics RCV000765777 SCV000897166 uncertain significance Cataract 41; Wolfram syndrome 1; Autosomal dominant nonsyndromic hearing loss 6; Type 2 diabetes mellitus; Wolfram-like syndrome 2018-10-31 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV001851006 SCV002178566 uncertain significance not provided 2024-01-22 criteria provided, single submitter clinical testing This sequence change replaces cysteine, which is neutral and slightly polar, with tyrosine, which is neutral and polar, at codon 360 of the WFS1 protein (p.Cys360Tyr). This variant is present in population databases (rs147157374, gnomAD 0.02%). This missense change has been observed in individual(s) with multiple congenital anomalies or with type 1 diabetes (PMID: 27959697, 31264968). ClinVar contains an entry for this variant (Variation ID: 374398). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt WFS1 protein function with a positive predictive value of 95%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Mayo Clinic Laboratories, Mayo Clinic RCV001851006 SCV004226969 uncertain significance not provided 2022-09-06 criteria provided, single submitter clinical testing PP3, PM2_supporting
Baylor Genetics RCV000414884 SCV000328754 uncertain significance Wolfram syndrome 1 2014-09-24 no assertion criteria provided clinical testing Our laboratory reported dual molecular diagnoses in ACTG1 (NM_001199954.1, c.118C>T) and WFS1 (NM_001145853.1, c.2191A>G and c.1079G>A in trans) in one individual with reported features of delayed motor milestones, delayed speech, mild intellectual disability, congenital bilateral sensorineural hearing loss, dysmorphic features and eye anomalies (strabismus, possible cortical visual impairment). Brain MRI showed dysplastic corpus callosum and possible intracranial lipoma. Additionally, this variant was seen once in our laboratory in trans with another missense variant (c.2452C>T) in a 22-year-old male with muscle weakness, obesity and type II diabetes, hypertension, fatigue and fibromyalgia, primary hypothyroidism, thymic hyperplasia, short stature, and nonalcoholic steatohepatitis

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.