ClinVar Miner

Submissions for variant NM_006031.6(PCNT):c.9155A>G (p.Asn3052Ser)

gnomAD frequency: 0.00009  dbSNP: rs779546932
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Genetic Services Laboratory, University of Chicago RCV000503243 SCV000596332 uncertain significance not specified 2016-07-07 criteria provided, single submitter clinical testing
GeneDx RCV001805118 SCV002050673 uncertain significance not provided 2023-10-23 criteria provided, single submitter clinical testing In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; Missense variant in a gene in which most reported pathogenic variants are truncating/loss of function; Has not been previously published as pathogenic or benign to our knowledge
Invitae RCV001805118 SCV003787307 uncertain significance not provided 2022-08-15 criteria provided, single submitter clinical testing This sequence change replaces asparagine, which is neutral and polar, with serine, which is neutral and polar, at codon 3052 of the PCNT protein (p.Asn3052Ser). This variant is present in population databases (rs779546932, gnomAD 0.03%). This variant has not been reported in the literature in individuals affected with PCNT-related conditions. ClinVar contains an entry for this variant (Variation ID: 436234). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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