ClinVar Miner

Submissions for variant NM_006164.5(NFE2L2):c.898C>T (p.Pro300Ser)

gnomAD frequency: 0.00005  dbSNP: rs587778556
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001854664 SCV002171043 uncertain significance not provided 2023-12-28 criteria provided, single submitter clinical testing This sequence change replaces proline, which is neutral and non-polar, with serine, which is neutral and polar, at codon 300 of the NFE2L2 protein (p.Pro300Ser). This variant is present in population databases (rs587778556, gnomAD 0.007%). This variant has not been reported in the literature in individuals affected with NFE2L2-related conditions. ClinVar contains an entry for this variant (Variation ID: 134903). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt NFE2L2 protein function with a negative predictive value of 80%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
ITMI RCV000121653 SCV000085851 not provided not specified 2013-09-19 no assertion provided reference population

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