ClinVar Miner

Submissions for variant NM_006204.4(PDE6C):c.2466G>C (p.Lys822Asn)

dbSNP: rs79487435
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Illumina Laboratory Services, Illumina RCV001103366 SCV001260119 likely benign Cone dystrophy 4 2017-04-27 criteria provided, single submitter clinical testing This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). Publications were found based on this search. The evidence from the literature, in combination with allele frequency data from public databases where available, was sufficient to determine this variant is unlikely to cause disease. Therefore, this variant is classified as likely benign.
Illumina Laboratory Services, Illumina RCV001105280 SCV001262227 likely benign Achromatopsia 2017-04-27 criteria provided, single submitter clinical testing This variant was observed as part of a predisposition screen in an ostensibly healthy population. A literature search was performed for the gene, cDNA change, and amino acid change (where applicable). No publications were found based on this search. Allele frequency data from public databases allowed determination this variant is unlikely to cause disease. Therefore, this variant is classified as likely benign.
Invitae RCV001213628 SCV001385270 uncertain significance not provided 2023-05-15 criteria provided, single submitter clinical testing ClinVar contains an entry for this variant (Variation ID: 877550). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant is likely to be disruptive. This variant has not been reported in the literature in individuals affected with PDE6C-related conditions. This variant is present in population databases (rs79487435, gnomAD 0.04%). This sequence change replaces lysine, which is basic and polar, with asparagine, which is neutral and polar, at codon 822 of the PDE6C protein (p.Lys822Asn).

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