ClinVar Miner

Submissions for variant NM_006204.4(PDE6C):c.836T>C (p.Ile279Thr)

gnomAD frequency: 0.00001  dbSNP: rs762152984
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Molecular Genetics Laboratory, Institute for Ophthalmic Research RCV000664197 SCV000678428 likely pathogenic Achromatopsia 2017-12-01 criteria provided, single submitter research
Invitae RCV002529035 SCV003460443 uncertain significance not provided 2022-10-13 criteria provided, single submitter clinical testing This variant is present in population databases (rs762152984, gnomAD 0.004%). This missense change has been observed in individual(s) with achromatopsia (PMID: 30080950). ClinVar contains an entry for this variant (Variation ID: 487697). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on PDE6C protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This sequence change replaces isoleucine, which is neutral and non-polar, with threonine, which is neutral and polar, at codon 279 of the PDE6C protein (p.Ile279Thr).
OMIM RCV000761207 SCV000891123 pathogenic Achromatopsia 5 2019-03-15 no assertion criteria provided literature only

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