Total submissions: 5
| Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
|---|---|---|---|---|---|---|---|---|
| Invitae | RCV000464549 | SCV000546577 | uncertain significance | Gastrointestinal stromal tumor | 2024-01-03 | criteria provided, single submitter | clinical testing | This sequence change replaces valine, which is neutral and non-polar, with isoleucine, which is neutral and non-polar, at codon 824 of the PDGFRA protein (p.Val824Ile). This variant is present in population databases (rs370600501, gnomAD 0.01%). This variant has not been reported in the literature in individuals affected with PDGFRA-related conditions. ClinVar contains an entry for this variant (Variation ID: 407384). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt PDGFRA protein function with a negative predictive value of 80%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. |
| Ambry Genetics | RCV001015662 | SCV001176522 | likely benign | Hereditary cancer-predisposing syndrome | 2022-02-18 | criteria provided, single submitter | clinical testing | This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity. |
| Sema4, |
RCV001015662 | SCV002538566 | uncertain significance | Hereditary cancer-predisposing syndrome | 2022-03-06 | criteria provided, single submitter | curation | |
| Gene |
RCV003327401 | SCV004034932 | uncertain significance | not provided | 2023-03-10 | criteria provided, single submitter | clinical testing | Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge; This variant is associated with the following publications: (PMID: 33918692, 26517354, 27121310) |
| Baylor Genetics | RCV004567983 | SCV005055178 | uncertain significance | Polyps, multiple and recurrent inflammatory fibroid, gastrointestinal | 2023-12-25 | criteria provided, single submitter | clinical testing |