ClinVar Miner

Submissions for variant NM_006231.4(POLE):c.1460T>C (p.Met487Thr)

dbSNP: rs2042969483
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001052148 SCV001216345 uncertain significance Colorectal cancer, susceptibility to, 12 2022-04-27 criteria provided, single submitter clinical testing This sequence change replaces methionine, which is neutral and non-polar, with threonine, which is neutral and polar, at codon 487 of the POLE protein (p.Met487Thr). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with POLE-related conditions. ClinVar contains an entry for this variant (Variation ID: 848400). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV004944812 SCV005478942 uncertain significance Hereditary cancer-predisposing syndrome 2024-12-05 criteria provided, single submitter clinical testing The p.M487T variant (also known as c.1460T>C), located in coding exon 14 of the POLE gene, results from a T to C substitution at nucleotide position 1460. The methionine at codon 487 is replaced by threonine, an amino acid with similar properties. This amino acid position is highly conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Based on the available evidence, the clinical significance of this variant remains unclear.

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