ClinVar Miner

Submissions for variant NM_006267.5(RANBP2):c.3220A>G (p.Lys1074Glu)

gnomAD frequency: 0.00001  dbSNP: rs372948464
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001071674 SCV001236990 uncertain significance Familial acute necrotizing encephalopathy 2019-12-04 criteria provided, single submitter clinical testing This sequence change replaces lysine with glutamic acid at codon 1074 of the RANBP2 protein (p.Lys1074Glu). The lysine residue is highly conserved and there is a small physicochemical difference between lysine and glutamic acid. This variant is present in population databases (rs372948464, ExAC 0.01%). This variant has not been reported in the literature in individuals with RANBP2-related conditions. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Benign"; Align-GVGD: "Class C55"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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