ClinVar Miner

Submissions for variant NM_006393.3(NEBL):c.1597G>A (p.Gly533Arg)

dbSNP: rs541364544
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000803645 SCV000943526 uncertain significance Primary dilated cardiomyopathy 2022-07-26 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Tolerated"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). ClinVar contains an entry for this variant (Variation ID: 648837). This variant has not been reported in the literature in individuals affected with NEBL-related conditions. This variant is present in population databases (rs541364544, gnomAD 0.06%), and has an allele count higher than expected for a pathogenic variant. This sequence change replaces glycine, which is neutral and non-polar, with arginine, which is basic and polar, at codon 533 of the NEBL protein (p.Gly533Arg).
Ambry Genetics RCV004028151 SCV005025319 uncertain significance not specified 2023-12-15 criteria provided, single submitter clinical testing The p.G533R variant (also known as c.1597G>A), located in coding exon 16 of the NEBL gene, results from a G to A substitution at nucleotide position 1597. The glycine at codon 533 is replaced by arginine, an amino acid with dissimilar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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