Submissions for variant NM_006516.4(SLC2A1):c.45C>T (p.Ala15=)

gnomAD frequency: 0.21537  dbSNP: rs1385129

Total submissions: 19

Submitter	RCV	SCV	Clinical significance	Condition	Last evaluated	Review status	Method	Comment
Eurofins Ntd Llc (ga)	RCV000081435	SCV000113366	benign	not specified	2016-06-27	criteria provided, single submitter	clinical testing
Genetic Services Laboratory, University of Chicago	RCV000081435	SCV000194968	benign	not specified	2013-02-08	criteria provided, single submitter	clinical testing
PreventionGenetics, part of Exact Sciences	RCV000081435	SCV000311527	benign	not specified		criteria provided, single submitter	clinical testing
Illumina Laboratory Services, Illumina	RCV000576517	SCV000357713	benign	Encephalopathy due to GLUT1 deficiency	2018-01-13	criteria provided, single submitter	clinical testing	This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
Illumina Laboratory Services, Illumina	RCV000366638	SCV000357714	benign	Dystonia 9	2018-01-13	criteria provided, single submitter	clinical testing	This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
Athena Diagnostics	RCV000576517	SCV000677502	benign	Encephalopathy due to GLUT1 deficiency	2017-04-14	criteria provided, single submitter	clinical testing
Ambry Genetics	RCV002311638	SCV000845891	benign	Inborn genetic diseases	2016-03-04	criteria provided, single submitter	clinical testing	This alteration is classified as benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Labcorp Genetics (formerly Invitae), Labcorp	RCV001514142	SCV001721899	benign	GLUT1 deficiency syndrome 1, autosomal recessive	2024-02-01	criteria provided, single submitter	clinical testing
GeneDx	RCV001610374	SCV001834768	benign	not provided	2015-03-03	criteria provided, single submitter	clinical testing
Genome-Nilou Lab	RCV000366638	SCV002057369	benign	Dystonia 9	2021-07-15	criteria provided, single submitter	clinical testing
Genome-Nilou Lab	RCV000576517	SCV002057717	benign	Encephalopathy due to GLUT1 deficiency	2021-07-15	criteria provided, single submitter	clinical testing
Genome-Nilou Lab	RCV001808315	SCV002057828	benign	Childhood onset GLUT1 deficiency syndrome 2	2021-07-15	criteria provided, single submitter	clinical testing
Genome-Nilou Lab	RCV001808316	SCV002057939	benign	Hereditary cryohydrocytosis with reduced stomatin	2021-07-15	criteria provided, single submitter	clinical testing
Unidad de Genómica Garrahan, Hospital de Pediatría Garrahan	RCV000081435	SCV005087589	benign	not specified	2024-07-15	criteria provided, single submitter	clinical testing	This variant is classified as Benign based on local population frequency. This variant was detected in 54% of patients studied in a panel designed for Epileptic and Developmental Encephalopathy and Progressive Myoclonus Epilepsy. Number of patients: 50. Only high quality variants are reported.
Breakthrough Genomics, Breakthrough Genomics	RCV001610374	SCV005288383	benign	not provided		criteria provided, single submitter	not provided
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	RCV000081435	SCV001744277	benign	not specified		no assertion criteria provided	clinical testing
Clinical Genetics, Academic Medical Center	RCV000081435	SCV001917996	benign	not specified		no assertion criteria provided	clinical testing
Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+	RCV000081435	SCV001959970	benign	not specified		no assertion criteria provided	clinical testing
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center	RCV000081435	SCV001974736	benign	not specified		no assertion criteria provided	clinical testing