ClinVar Miner

Submissions for variant NM_006642.5(SDCCAG8):c.397G>T (p.Glu133Ter)

dbSNP: rs768207230
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV002932081 SCV003257198 pathogenic Senior-Loken syndrome 7; Bardet-Biedl syndrome 16 2023-10-03 criteria provided, single submitter clinical testing This sequence change creates a premature translational stop signal (p.Glu133*) in the SDCCAG8 gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in SDCCAG8 are known to be pathogenic (PMID: 20835237, 22190896). This variant is present in population databases (rs768207230, gnomAD 0.009%). This variant has not been reported in the literature in individuals affected with SDCCAG8-related conditions. ClinVar contains an entry for this variant (Variation ID: 2048826). For these reasons, this variant has been classified as Pathogenic.
Ambry Genetics RCV002932082 SCV003602783 pathogenic Inborn genetic diseases 2022-03-07 criteria provided, single submitter clinical testing The c.397G>T (p.E133*) alteration, located in exon 4 (coding exon 4) of the SDCCAG8 gene, consists of a G to T substitution at nucleotide position 397. This changes the amino acid from a glutamic acid (E) to a stop codon at amino acid position 133. This alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. Based on data from gnomAD, the T allele has an overall frequency of <0.01% (3/251258) total alleles studied. The highest observed frequency was 0.01% (3/34558) of Latino alleles. Based on the available evidence, this alteration is classified as pathogenic.

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