ClinVar Miner

Submissions for variant NM_006642.5(SDCCAG8):c.416G>T (p.Cys139Phe)

dbSNP: rs773522256
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001307883 SCV001497311 uncertain significance Senior-Loken syndrome 7; Bardet-Biedl syndrome 16 2022-07-26 criteria provided, single submitter clinical testing This sequence change replaces cysteine, which is neutral and slightly polar, with phenylalanine, which is neutral and non-polar, at codon 139 of the SDCCAG8 protein (p.Cys139Phe). This variant is present in population databases (rs773522256, gnomAD 0.0009%). This variant has not been reported in the literature in individuals affected with SDCCAG8-related conditions. ClinVar contains an entry for this variant (Variation ID: 1010279). Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Tolerated"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV004034148 SCV004944633 uncertain significance Inborn genetic diseases 2023-12-21 criteria provided, single submitter clinical testing The c.416G>T (p.C139F) alteration is located in exon 4 (coding exon 4) of the SDCCAG8 gene. This alteration results from a G to T substitution at nucleotide position 416, causing the cysteine (C) at amino acid position 139 to be replaced by a phenylalanine (F). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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