Submissions for variant NM_006772.3(SYNGAP1):c.2336+7G>A

Total submissions: 2

Submitter	RCV	SCV	Clinical significance	Condition	Last evaluated	Review status	Method	Comment
Women's Health and Genetics/Laboratory Corporation of America, LabCorp	RCV003479830	SCV004223669	uncertain significance	not specified	2023-11-10	criteria provided, single submitter	clinical testing	Variant summary: SYNGAP1 c.2336+7G>A alters a conserved nucleotide located close to a canonical splice site and therefore could affect mRNA splicing, leading to a significantly altered protein sequence. Consensus agreement among computation tools predict no significant impact on normal splicing. However, these predictions have yet to be confirmed by functional studies. The variant was absent in 250314 control chromosomes. The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. To our knowledge, no occurrence of c.2336+7G>A in individuals affected with Intellectual Disability, Autosomal Dominant 5 and no experimental evidence demonstrating its impact on protein function have been reported. No submitters have cited clinical-significance assessments for this variant to ClinVar after 2014. Based on the evidence outlined above, the variant was classified as uncertain significance.
Labcorp Genetics (formerly Invitae), Labcorp	RCV003507513	SCV004327679	likely benign	Intellectual disability, autosomal dominant 5	2023-09-24	criteria provided, single submitter	clinical testing