ClinVar Miner

Submissions for variant NM_006790.3(MYOT):c.1378T>C (p.Phe460Leu)

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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV002883017 SCV003634129 uncertain significance Inborn genetic diseases 2022-07-12 criteria provided, single submitter clinical testing The c.1378T>C (p.F460L) alteration is located in exon 10 (coding exon 9) of the MYOT gene. This alteration results from a T to C substitution at nucleotide position 1378, causing the phenylalanine (F) at amino acid position 460 to be replaced by a leucine (L). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.
Invitae RCV003108189 SCV003783980 uncertain significance Myofibrillar myopathy 3 2022-11-23 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated. This variant has not been reported in the literature in individuals affected with MYOT-related conditions. This variant is present in population databases (rs765499949, gnomAD 0.003%). This sequence change replaces phenylalanine, which is neutral and non-polar, with leucine, which is neutral and non-polar, at codon 460 of the MYOT protein (p.Phe460Leu).
GeneDx RCV003159242 SCV003853236 uncertain significance not provided 2022-09-29 criteria provided, single submitter clinical testing Missense variants in this gene are often considered pathogenic (HGMD); In silico analysis supports that this missense variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge

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