ClinVar Miner

Submissions for variant NM_006846.4(SPINK5):c.2441+3_2441+6del

dbSNP: rs1221030255
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV003595709 SCV001378720 likely pathogenic Ichthyosis linearis circumflexa 2023-08-14 criteria provided, single submitter clinical testing ClinVar contains an entry for this variant (Variation ID: 938195). In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. Variants that disrupt the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. This variant is also known as c.2441+3delGAGT. This variant has been observed in individuals with Netherton syndrome (PMID: 20107740; Invitae). It has also been observed to segregate with disease in related individuals. This variant is not present in population databases (gnomAD no frequency). This sequence change falls in intron 25 of the SPINK5 gene. It does not directly change the encoded amino acid sequence of the SPINK5 protein. It affects a nucleotide within the consensus splice site.

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