ClinVar Miner

Submissions for variant NM_006892.4(DNMT3B):c.380G>A (p.Arg127Gln)

gnomAD frequency: 0.00002  dbSNP: rs754832933
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001929104 SCV002199151 uncertain significance Centromeric instability of chromosomes 1,9 and 16 and immunodeficiency 2021-08-14 criteria provided, single submitter clinical testing This sequence change replaces arginine with glutamine at codon 127 of the DNMT3B protein (p.Arg127Gln). The arginine residue is highly conserved and there is a small physicochemical difference between arginine and glutamine. This variant is present in population databases (rs754832933, ExAC 0.002%). This variant has not been reported in the literature in individuals affected with DNMT3B-related conditions. Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0". The glutamine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV003264278 SCV003947062 uncertain significance Inborn genetic diseases 2023-03-17 criteria provided, single submitter clinical testing The c.380G>A (p.R127Q) alteration is located in exon 5 (coding exon 4) of the DNMT3B gene. This alteration results from a G to A substitution at nucleotide position 380, causing the arginine (R) at amino acid position 127 to be replaced by a glutamine (Q). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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