ClinVar Miner

Submissions for variant NM_007078.3(LDB3):c.1752G>C (p.Leu584=)

dbSNP: rs1589676711
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000793207 SCV000932548 uncertain significance Myofibrillar myopathy 4 2018-11-08 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may create or strengthen a splice site, but this prediction has not been confirmed by published transcriptional studies. This variant has not been reported in the literature in individuals with LDB3-related disease. This variant is not present in population databases (ExAC no frequency). This sequence change affects codon 584 of the LDB3 mRNA. It is a 'silent' change, meaning that it does not change the encoded amino acid sequence of the LDB3 protein. The LDB3 gene has multiple clinically relevant transcripts. The c.1752G>C variant occurs in alternate transcript NM_007078.2, which corresponds to position c.*188665G>C in NM_001080116.1, the primary transcript listed in the Methods.
GeneDx RCV000841038 SCV000982996 likely benign not provided 2018-04-03 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.

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