ClinVar Miner

Submissions for variant NM_007078.3(LDB3):c.287T>C (p.Val96Ala)

dbSNP: rs794729056
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000183513 SCV000235973 likely benign not specified 2014-04-22 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Invitae RCV000529642 SCV000638665 uncertain significance Myofibrillar myopathy 4 2017-04-16 criteria provided, single submitter clinical testing In summary, this variant is a rare missense change that is not predicted to affect protein function. There is no indication that it causes disease, but the available evidence is currently insufficient to prove that conclusively. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated, but these predictions have not been confirmed by published functional studies. This variant is not present in population databases (ExAC no frequency) and has not been reported in the literature in individuals with a LDB3-related disease. ClinVar contains an entry for this variant (Variation ID: 201834). This sequence change replaces valine with alanine at codon 96 of the LDB3 protein (p.Val96Ala). The valine residue is weakly conserved and there is a small physicochemical difference between valine and alanine.

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