ClinVar Miner

Submissions for variant NM_007078.3(LDB3):c.424T>C (p.Phe142Leu)

dbSNP: rs2132371597
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories RCV001810755 SCV002048074 uncertain significance not provided 2021-03-02 criteria provided, single submitter clinical testing The LDB3 c.424T>C; p.Phe142Leu variant, to our knowledge, is not reported in the medical literature or gene-specific databases. This variant is also absent from general population databases (Exome Variant Server, Genome Aggregation Database), indicating it is not a common polymorphism. The phenylalanine at codon 142 is weakly conserved, and computational analyses predict that this variant is neutral (REVEL: 0.111). However, due to limited information, the clinical significance of the p.Phe142Leu variant is uncertain at this time.
Invitae RCV002074151 SCV002326067 uncertain significance Myofibrillar myopathy 4 2023-05-23 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant is not likely to affect RNA splicing. Experimental studies and prediction algorithms are not available or were not evaluated, and the functional significance of this variant is currently unknown. ClinVar contains an entry for this variant (Variation ID: 1330379). This variant has not been reported in the literature in individuals affected with LDB3-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces phenylalanine, which is neutral and non-polar, with leucine, which is neutral and non-polar, at codon 142 of the LDB3 protein (p.Phe142Leu). The LDB3 gene has multiple clinically relevant transcripts. This variant occurs in alternate transcript NM_007078.3, and corresponds to NM_001080116.1:c.321+1381T>C in the primary transcript.

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