ClinVar Miner

Submissions for variant NM_007078.3(LDB3):c.716T>C (p.Val239Ala)

gnomAD frequency: 0.00001  dbSNP: rs774595610
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001921116 SCV002190150 uncertain significance Myofibrillar myopathy 4 2024-01-29 criteria provided, single submitter clinical testing This sequence change replaces valine, which is neutral and non-polar, with alanine, which is neutral and non-polar, at codon 192 of the LDB3 protein (p.Val192Ala). This variant is present in population databases (rs774595610, gnomAD 0.01%). This variant has not been reported in the literature in individuals affected with LDB3-related conditions. ClinVar contains an entry for this variant (Variation ID: 1415919). An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant is likely to be disruptive. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002370517 SCV002662794 uncertain significance Cardiovascular phenotype 2020-12-22 criteria provided, single submitter clinical testing The p.V239A variant (also known as c.716T>C), located in coding exon 5 of the LDB3 gene, results from a T to C substitution at nucleotide position 716. The valine at codon 239 is replaced by alanine, an amino acid with similar properties. This amino acid position is well conserved in available vertebrate species. In addition, this alteration is predicted to be deleterious by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.
Fulgent Genetics, Fulgent Genetics RCV002503594 SCV002797031 uncertain significance Dilated cardiomyopathy 1C; Myofibrillar myopathy 4 2021-11-07 criteria provided, single submitter clinical testing

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