ClinVar Miner

Submissions for variant NM_007194.4(CHEK2):c.1497G>C (p.Leu499=)

gnomAD frequency: 0.00032  dbSNP: rs587780890
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Total submissions: 17
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000212470 SCV000167693 benign not specified 2013-10-28 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Ambry Genetics RCV000124266 SCV000213524 likely benign Hereditary cancer-predisposing syndrome 2014-06-23 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Invitae RCV000195471 SCV000253481 likely benign Familial cancer of breast 2024-01-31 criteria provided, single submitter clinical testing
Counsyl RCV000195471 SCV000489050 likely benign Familial cancer of breast 2016-08-10 criteria provided, single submitter clinical testing
Color Diagnostics, LLC DBA Color Health RCV000124266 SCV000684602 likely benign Hereditary cancer-predisposing syndrome 2015-02-11 criteria provided, single submitter clinical testing
PreventionGenetics, part of Exact Sciences RCV000679676 SCV000806872 likely benign not provided 2018-01-19 criteria provided, single submitter clinical testing
Quest Diagnostics Nichols Institute San Juan Capistrano RCV000679676 SCV000888108 likely benign not provided 2022-08-23 criteria provided, single submitter clinical testing
Genetic Services Laboratory, University of Chicago RCV000212470 SCV002070841 likely benign not specified 2021-11-29 criteria provided, single submitter clinical testing
Sema4, Sema4 RCV000124266 SCV002537384 likely benign Hereditary cancer-predisposing syndrome 2020-11-10 criteria provided, single submitter curation
CeGaT Center for Human Genetics Tuebingen RCV000679676 SCV002585917 likely benign not provided 2022-09-01 criteria provided, single submitter clinical testing CHEK2: BP4, BP7
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV000212470 SCV002600366 likely benign not specified 2022-10-09 criteria provided, single submitter clinical testing
Myriad Genetics, Inc. RCV000195471 SCV004044117 benign Familial cancer of breast 2023-04-26 criteria provided, single submitter clinical testing This variant is considered benign. This variant is a silent/synonymous amino acid change and it is not expected to impact splicing.
Institute for Biomarker Research, Medical Diagnostic Laboratories, L.L.C. RCV000124266 SCV004228034 likely benign Hereditary cancer-predisposing syndrome 2023-11-21 criteria provided, single submitter clinical testing
Genome Diagnostics Laboratory, Amsterdam University Medical Center RCV000679676 SCV001806998 likely benign not provided no assertion criteria provided clinical testing
Clinical Genetics Laboratory, Department of Pathology, Netherlands Cancer Institute RCV000212470 SCV001905935 benign not specified no assertion criteria provided clinical testing
Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ RCV000679676 SCV001955255 likely benign not provided no assertion criteria provided clinical testing
Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) RCV000679676 SCV002036225 likely benign not provided no assertion criteria provided clinical testing

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